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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18970878_18971524_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18970878 - 18971524
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCCGCC
5'SS Class:
weak_major
3'SS Sequence:
CCTCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAA
U12 Branch Point Sequence:
GTCCCCTCCAAG
Flanking Amino Acid:
YLRVELSDVRNPDITITDNV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.3
48.8
43.3
Major BPS
47.3
-0.1
1.3
56
39.4
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
41.6
-0.9
3.4
51
45.8
Minor BPS
42.9
-0.7
2.1
47.38
45

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820