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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18971568_18972418_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18971568 - 18972418
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGATCATTGATT
Flanking Amino Acid:
TITDNVLHFRAQGHGAKGDN
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
63.6
0.51
1.6
78.06
38

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820