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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18975155_18975523_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18975155 - 18975523
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTATTGATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTATTGATT
Flanking Amino Acid:
MKIESRVPKDPFKHLKKGYL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76.9
0.61
0.9
74.9
39.6
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
63.3
0.5
1.6
80.48
35.1

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820