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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18975635_18976234_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18975635 - 18976234
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTGTCTTTAAAA
Flanking Amino Acid:
MTVRLFILGKDSFYDTFHTI
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
90.9
28.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
27.1
-2.6
3.8
41.5
45.1
Minor BPS
75.9
0.81
1.3
80.44
35.4

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820