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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18976363_18976874_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18976363 - 18976874
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAC
Flanking Amino Acid:
RSPLIPAIIQVFGRNFILFV
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80.3
0.68
0.9
78
34.2
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
81.7
0.97
1.2
87.41
28.5

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820