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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18978842_18979735_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18978842 - 18979735
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CCAACCTAAACA
Flanking Amino Acid:
LQLYLIALFLGVFVNFRYLY
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
86.7
0.83
0.7
84.4
30
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
54.3
0.13
1.8
60.6
45.2

Associated Gene:

Gene:
HACD3
Ensembl Gene ID:
ENSAPLG00000013863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014464
18970791 - 18980610
9820