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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18980561_18982629_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18980561 - 18982629
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTTTCCTTATTT
Flanking Amino Acid:
LTHAAQQLKVCLHYQSGKHF
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
88.3
26.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.3
0.82
0.8
83.9
30.7
Minor 5ss
28.2
-2.5
3.8
40.7
39.2
Minor BPS
75.7
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
INTS14
Ensembl Gene ID:
ENSAPLG00000014064
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014696
18980483 - 18992301
11819