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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18990555_18992034_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18990555 - 18992034
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
PFTRDYNTLQEALSNMDDYD
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
INTS14
Ensembl Gene ID:
ENSAPLG00000014064
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037713
18981945 - 18992301
10357
ENSAPLT00000014696
18980483 - 18992301
11819