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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18998126_18998667_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18998126 - 18998667
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGCTACTGACTG
Flanking Amino Acid:
KKPADGKKLQPGSALQRGSS
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
77.9
0.63
0.8
73.4
31.1
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
45
-0.5
1.9
49.83
44.1

Associated Gene:

Gene:
SLC24A1
Ensembl Gene ID:
ENSAPLG00000014168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014757
18996087 - 19008895
12809