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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19005599_19006295_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19005599 - 19006295
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGAA
5'SS Class:
major
3'SS Sequence:
CCCCAACCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TTCCCCCCAACC
Flanking Amino Acid:
QKADAPQDGQPSSQSDNSED
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
32.5
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
66.3
0.37
0.9
57.3
32
Minor 5ss
38.2
-1.3
3.1
49.1
47.1
Minor BPS
53.3
0.08
1.9
69.52
41.6

Associated Gene:

Gene:
SLC24A1
Ensembl Gene ID:
ENSAPLG00000014168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014757
18996087 - 19008895
12809