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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19006497_19006878_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19006497 - 19006878
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTGGTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGGTTTTAACA
Flanking Amino Acid:
WSTMPDVRNPDSKKFFVITF
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.2
0.61
1
73.3
40.9
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
69
0.59
1.3
74.03
38.5

Associated Gene:

Gene:
SLC24A1
Ensembl Gene ID:
ENSAPLG00000014168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014757
18996087 - 19008895
12809