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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19007996_19008645_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19007996 - 19008645
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCCTTTACT
Flanking Amino Acid:
VGSNIFDITVGLPVPWFLYS
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.2
0.75
0.8
77.2
30.3
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
86.3
1.23
1.4
100.6
26.7

Associated Gene:

Gene:
SLC24A1
Ensembl Gene ID:
ENSAPLG00000014168
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014757
18996087 - 19008895
12809