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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19016200_19016400_R

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19016200 - 19016400
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATCATACTA
Flanking Amino Acid:
QPLYILWNAQSQNRTLLFET
Intron Amino Acid Position:
1732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72.5
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
53.8
0.13
2.7
70.1
41.4
Minor BPS
46.9
-0.2
1.9
60.21
40.2

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834