About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19017722_19018172_R


Intron Information:

Intron Rank:
25

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
19017722 - 19018172

Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTAAACATG

5'SS Class:
strong_major

3'SS Sequence:
TATTTTCCCCTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
ACATTCTTAACT

Flanking Amino Acid:
MSVQEDLNSDSKSKQHDSVC

Intron Amino Acid Position:
1563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.3
0.74
1
75.1
41.1

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
77.6
0.62
0.8
70.8
35.8

Minor 5ss
42.3
-0.8
3
56.9
47.4

Minor BPS
77.6
0.95
1.1
82.83
38.2

Associated Gene:

Gene:
DENND4A

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19013868 - 19052701
38834

19013868 - 19052701
38834