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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19018454_19018531_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19018454 - 19018531
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTAAGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTTTTTTAAGC
Flanking Amino Acid:
CLVHDEEIMAEIRDLRRPGR
Intron Amino Acid Position:
1479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
54.6
44.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
70.8
0.47
1
66.7
38.4
Minor 5ss
26.3
-2.7
3
30
43
Minor BPS
59.2
0.27
1.7
64.58
42.1

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834