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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19020028_19020995_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19020028 - 19020995
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TGGAATTTACTT
Flanking Amino Acid:
KFTMYAASSKDQNSDRASVS
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
85.1
0.79
0.8
84.1
30.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
46.9
-0.1
1.8
61.99
42.4

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834