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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19022090_19022898_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19022090 - 19022898
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGTATCTTATTT
Flanking Amino Acid:
VDNTTAEASTESSAGLLFTS
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.7
0.71
0.9
73
41.6
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
56.7
0.29
1.6
71.53
39.6

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834