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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19023040_19023909_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19023040 - 19023909
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTGTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTGTACAC
Flanking Amino Acid:
EDKRESDSSSLSEVESAKGS
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
72.6
36.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.3
0.61
0.9
72.5
36.8
Minor 5ss
49
-0.1
2.5
68.8
35.7
Minor BPS
49
-0.1
2.3
70.99
40.7

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834