About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19024705_19024807_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19024705 - 19024807
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTGACTGTAAAA
Flanking Amino Acid:
HTKKIDPPDEVCYRVLMQLC
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.2
0.7
0.9
77.7
40.6
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
48.9
-0
2.1
65
41.5

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834