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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19037046_19037725_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19037046 - 19037725
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATTTTTGAACA
Flanking Amino Acid:
SQPVSSPLPLSGGKFSTLLQ
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.7
90.3
25.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.2
0.59
1
73.6
40.4
Minor 5ss
25.8
-2.8
3.6
36.7
40.4
Minor BPS
69.4
0.61
1.3
77.03
33.3

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834