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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19044870_19046316_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19044870 - 19046316
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTCTTTACA
Flanking Amino Acid:
KVDKNLNNSVWGSAVYLCYK
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
73.9
30.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90
0.9
0.7
84.5
29.7
Minor 5ss
38.4
-1.3
3.1
47.6
42.6
Minor BPS
72.5
0.7
1.5
81.25
33.4

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834