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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19047489_19052615_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
19047489 - 19052615
Intron Length:
5127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTCCAATAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
80.8
0.69
0.8
74.5
35
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
57.7
0.24
1.9
75.53
35.1

Associated Gene:

Gene:
DENND4A
Ensembl Gene ID:
ENSAPLG00000014243
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045937
19013868 - 19052701
38834
ENSAPLT00000014904
19013868 - 19052701
38834