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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19061009_19061182_R

Intron Information:

Intron Rank:
139490
Intron Class:
major
Intron Phase:
Intron Coordinates:
19061009 - 19061182
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TTTCGCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
80.6
0.69
0.8
78
30.8
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
48.7
-0.1
2.1
68.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022528
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022110
19058555 - 19061317
2763