About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19086489_19087397_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19086489 - 19087397
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTTTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GGTTCTCTAATG
Flanking Amino Acid:
GQERYRAITSAYYRGAVGAL
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.4
62
44
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
78.7
0.65
0.8
73.3
31.7
Minor 5ss
34
-1.8
3.2
39
39.8
Minor BPS
56.3
0.06
1.7
61.64
40.4

Associated Gene:

Gene:
RAB11A
Ensembl Gene ID:
ENSAPLG00000014962
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021226
19079346 - 19094797
15452
ENSAPLT00000015608
19078681 - 19095667
16987