About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19088120_19093921_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19088120 - 19093921
Intron Length:
5802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCT
Flanking Amino Acid:
VEAAFQTILTEIYRIVSQKQ
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.8
73.1
37
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
60.1
0.4
1.8
79.56
42.7

Associated Gene:

Gene:
RAB11A
Ensembl Gene ID:
ENSAPLG00000014962
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021226
19079346 - 19094797
15452
ENSAPLT00000015608
19078681 - 19095667
16987