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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19100962_19105602_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19100962 - 19105602
Intron Length:
4641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
GGAAAGCTAACA
Flanking Amino Acid:
NTYIMEKSFKDYMKESVCSS
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
39.4
-0.8
2.3
49.02
40.4

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134