About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19101020_19116227_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
19101020 - 19116227

Intron Length:
15208

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGATATT

5'SS Class:
strong_major

3'SS Sequence:
GCCCCTCCTGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCTCAC

U12 Branch Point Sequence:
TTCTCCCCACCC

Flanking Amino Acid:
SNVDGNSSSKRLSCDPPRKA

Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.6
0.72
1
84.2
33.9

Major BPS
72.4
0.56
1
73.5
32.5

Major PPT
72.3
0.5
0.8
65
30.6

Minor 5ss
39.6
-1.2
3.3
59.2
45.4

Minor BPS
48.4
-0.1
2.1
67.5
44

Associated Gene:

Gene:
MEGF11

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19100046 - 19290179
190134