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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19150355_19169350_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19150355 - 19169350
Intron Length:
18996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ATTTCTTTAGCT
Flanking Amino Acid:
GKCTCAPGYMGDDCTITCME
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
74.1
0.6
1
69
38.9
Major PPT
86.3
0.82
0.8
80.6
37
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
76.2
0.9
1.4
90.41
33.3

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134
ENSAPLT00000015745
19100046 - 19290179
190134