Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19176668_19182253_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19176668 - 19182253

Intron Length:

5586

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAT|GCATCTGCA

5'SS Class:

weak_major

3'SS Sequence:

CACGTCAATGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTGAC

U12 Branch Point Sequence:

ACTGCCAAAACG

Flanking Amino Acid:

GGHCDPVTGKSCMCDPGFKG

Intron Amino Acid Position:

296

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.7

0.23

1.4

62.8

40.4

Major BPS

62.5

0.31

1.2

54.8

42.1

Major PPT

46.3

-0.2

1.7

47.5

39.2

Minor 5ss

36.7

-1.5

4.1

53.5

Minor BPS

46.5

-0.4

2.1

54.27

46.6

Associated Gene:

Gene:

MEGF11

Ensembl Gene ID:

ENSAPLG00000015095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038565

19100046 - 19290179

190134