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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19182360_19187069_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19182360 - 19187069
Intron Length:
4710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTAGG
5'SS Class:
major
3'SS Sequence:
GCAACCTTACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
GTTGACTGAACT
Flanking Amino Acid:
GECSCPPGWMGLVCAQPCPS
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.6
45.7
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
56.4
0.14
1
47.9
40
Minor 5ss
34.2
-1.8
2.9
39.3
41.1
Minor BPS
59.8
0.39
1.8
79.08
42.4

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134