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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19189107_19268427_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19189107 - 19268427
Intron Length:
79321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGATCAT
U12 Branch Point Sequence:
ATCTTGGTAACT
Flanking Amino Acid:
PGWGGTDCSSGCDSDHWGPH
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
60.7
0.27
1.3
63.4
42.8
Major PPT
79.4
0.66
0.9
72.7
41.8
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
47.4
-0.1
2.6
73.16
44.2

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134
ENSAPLT00000015745
19100046 - 19290179
190134