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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19268521_19286764_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19268521 - 19286764
Intron Length:
18244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCTTCTTAACA
Flanking Amino Acid:
GYYESGDYCIPLCTEECVHG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
73.3
37.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
83.9
0.76
0.8
80.8
29.8
Minor 5ss
43.5
-0.7
2.4
51.1
38.7
Minor BPS
84.7
1.09
1
86.69
32.1

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134
ENSAPLT00000015745
19100046 - 19290179
190134