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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19287488_19290063_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19287488 - 19290063
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCATCTTTCACT
Flanking Amino Acid:
DDPNVCSHWESYAVTVQESY
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
60.5
0.41
1.8
73.14
43.8

Associated Gene:

Gene:
MEGF11
Ensembl Gene ID:
ENSAPLG00000015095
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038565
19100046 - 19290179
190134
ENSAPLT00000015745
19100046 - 19290179
190134