About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19301882_19305452_R

Intron Information:

Intron Rank:
134911
Intron Class:
major
Intron Phase:
Intron Coordinates:
19301882 - 19305452
Intron Length:
3571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTTTTT
5'SS Class:
major
3'SS Sequence:
TTCCTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CAATTTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
78.5
31.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.8
0.58
0.9
71.5
33
Minor 5ss
46.8
-0.3
2.7
66.9
44.3
Minor BPS
55.1
0.16
1.6
60.29
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019937
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026859
19301451 - 19306234
4784