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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19380282_19381076_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19380282 - 19381076
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATC
5'SS Class:
major
3'SS Sequence:
TTTTGTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTTTTGTATT
Flanking Amino Acid:
CQAVQHQKGRRQYNKLRNLV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
78.3
36.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.1
0.81
0.8
78.1
40.1
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
56.3
0.28
1.7
79.72
37

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047560
19374858 - 19388116
13259
ENSAPLT00000015964
19374858 - 19391589
16732