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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19381206_19381848_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19381206 - 19381848
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTATTTCAAACT
Flanking Amino Acid:
KGESMEKWQTRSIYNAAVWY
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
72.6
39.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
57.9
0.27
2.4
73.9
42.6
Minor BPS
52.2
0.15
2
76.75
40

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047560
19374858 - 19388116
13259
ENSAPLT00000015964
19374858 - 19391589
16732