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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19383172_19383801_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19383172 - 19383801
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GGTTTATTACTT
Flanking Amino Acid:
AGIKSGRYIQGTLNVNKHRA
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.3
73.2
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.8
78.9
34.4
Minor 5ss
36
-1.6
2.7
44.9
43
Minor BPS
50.4
0.09
1.9
70.2
40.8

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047560
19374858 - 19388116
13259
ENSAPLT00000015964
19374858 - 19391589
16732