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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19383881_19384503_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19383881 - 19384503
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAAGA
5'SS Class:
major
3'SS Sequence:
ATTTTAAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
RLQGFGSKETDLQSDILIYG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
70.2
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.3
0.48
1
69.1
40.6
Minor 5ss
26.7
-2.7
2.8
31.6
42.2
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015964
19374858 - 19391589
16732