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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19386340_19387048_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19386340 - 19387048
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATCACT
Flanking Amino Acid:
ISVAPFSEIQMSEMPTSSSK
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.1
0.77
0.9
79.9
37.7
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
51.5
0.13
2
74.71
42.1

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015964
19374858 - 19391589
16732