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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19389748_19389854_F

Intron Information:

Intron Rank:
15
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
19389748 - 19389854
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATCCTGT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTTGTTTGTAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGACTTATTT
Flanking Amino Acid:
SCSEEEFHHYGLALDKYTHF
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.2
53.6
45.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
76.8
0.9
1.8
81.9
38.3
Minor BPS
59.1
0.36
1.9
80.67
41.5

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015964
19374858 - 19391589
16732