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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19390506_19391027_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19390506 - 19391027
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AAATTCTTAACA
Flanking Amino Acid:
RTNGVLVFVPRYGIKGAAYM
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.8
0.6
1
78.5
33.7
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
76.2
0.82
1.1
75.89
34.4

Associated Gene:

Gene:
DIS3L
Ensembl Gene ID:
ENSAPLG00000015294
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015964
19374858 - 19391589
16732