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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19393078_19393226_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19393078 - 19393226
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAACA
Flanking Amino Acid:
MQCNSQSQHNELSPSYPEEE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81
0.7
0.9
77.2
35.5
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
72.6
0.71
1.4
82.02
32.3

Associated Gene:

Gene:
TIPIN
Ensembl Gene ID:
ENSAPLG00000015332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015979
19392914 - 19398812
5899