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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19393422_19395138_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19393422 - 19395138
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
ATCTTTATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTCCTTCAATC
Flanking Amino Acid:
ILSEDFTGNEDGGGESNGLD
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.9
0.63
0.9
70.1
39.5
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
55.7
0.16
1.5
62.26
37.5

Associated Gene:

Gene:
TIPIN
Ensembl Gene ID:
ENSAPLG00000015332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015979
19392914 - 19398812
5899