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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19395203_19395720_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19395203 - 19395720
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
AAATGCTTATTT
Flanking Amino Acid:
ESLGSKKEVQTCLKRIRLDL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.9
90.9
28.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
37.4
-1.4
3.9
59.2
45.4
Minor BPS
50.4
0.09
2
68.45
42.5

Associated Gene:

Gene:
TIPIN
Ensembl Gene ID:
ENSAPLG00000015332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015979
19392914 - 19398812
5899