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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19395844_19396573_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19395844 - 19396573
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAACTTCTAACA
Flanking Amino Acid:
NVKFKGKGHEAEDLKTLIRH
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.4
0.57
1.1
79.5
37.9
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
52.2
0.07
1.6
63.47
36.1

Associated Gene:

Gene:
TIPIN
Ensembl Gene ID:
ENSAPLG00000015332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015979
19392914 - 19398812
5899