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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19396650_19397494_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19396650 - 19397494
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTG
5'SS Class:
major
3'SS Sequence:
TCACCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAAATAACT
Flanking Amino Acid:
KRSIPKLDAQRLVSERGLPA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67
39
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.6
0.55
0.9
67.8
37.5
Minor 5ss
47.7
-0.2
2.8
64.9
46.4
Minor BPS
52.5
0.16
2.1
81.52
38.8

Associated Gene:

Gene:
TIPIN
Ensembl Gene ID:
ENSAPLG00000015332
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015979
19392914 - 19398812
5899