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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19423244_19426270_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19423244 - 19426270
Intron Length:
3027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTGACTGAAGC
Flanking Amino Acid:
GEISICMEHMDGGSLDQVLK
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
38.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
70.2
0.46
1
63.8
41.5
Minor 5ss
33.1
-1.9
3.1
38.5
40.7
Minor BPS
49.7
-0
2
68.21
43

Associated Gene:

Gene:
MAP2K1
Ensembl Gene ID:
ENSAPLG00000015480
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016177
19405064 - 19441233
36170