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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19426349_19426886_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19426349 - 19426886
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAACT
Flanking Amino Acid:
EQILGKVSIAVIKGLTYLRE
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.8
77.9
36.6
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
71.4
0.75
1.9
93.33
34.8

Associated Gene:

Gene:
MAP2K1
Ensembl Gene ID:
ENSAPLG00000015480
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016177
19405064 - 19441233
36170