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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19426939_19433695_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19426939 - 19433695
Intron Length:
6757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAGTTATAAATC
Flanking Amino Acid:
LREKHKIMHRDVKPSNILVN
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
88.1
0.86
0.7
80.5
36.7
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
48.6
-0.1
1.9
59.9
39.7

Associated Gene:

Gene:
MAP2K1
Ensembl Gene ID:
ENSAPLG00000015480
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016177
19405064 - 19441233
36170