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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_19437537_19439167_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19437537 - 19439167
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTGCTTTAAAC
Flanking Amino Acid:
FELLDYIVNEPPPKLPNGVF
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
65.3
0.46
1.5
70.99
40.7

Associated Gene:

Gene:
MAP2K1
Ensembl Gene ID:
ENSAPLG00000015480
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016177
19405064 - 19441233
36170